Enhanced Manifold Comparison Report

Blue points: Control cells. Colored points: Perturbed cells colored by local density difference (red = higher density in perturbed, blue = higher in control). Black dots mark regions with statistically significant differences.

Heatmap showing where perturbed cell density differs from control. Red areas have higher perturbed density, blue areas have higher control density. Contour lines show statistically significant regions (p < 0.05).

Vectors show the average direction and magnitude of change from the control centroid (blue cross) for each perturbation type.